DreEX0025488 @ danRer10
Exon Skipping
Gene
ENSDARG00000101423 | cyp2y3
Description
cytochrome P450, family 2, subfamily Y, polypeptide 3 [Source:ZFIN;Acc:ZDB-GENE-050522-490]
Coordinates
chr15:99897-101647:-
Coord C1 exon
chr15:101471-101647
Coord A exon
chr15:101206-101347
Coord C2 exon
chr15:99897-100084
Length
142 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGCACTATAACAGGAA
3' ss Score
7.44
5' ss Seq
AGGGTAAGA
5' ss Score
9.21
Exon sequences
Seq C1 exon
CTCTACAACATCTTCCCCCAAGTAATGGAAAGCTTTTCTAGTAGACATCACGCCATCTTAAAAGACGTAGAAAACATCCGGACCTTCATTAGGAACAAAGTTAAGGAACATGAACAGAGATTAGACTTCAGTGACCCAAGTGATTTTATTGACTGCTTCCTTATCAGACTCACTCAG
Seq A exon
GAAAAAGACAAGCTTGACACAGAATTTCACAAAGATAACTTGATGGCGACAGTTTTAAACCTGTTCGTAGCTGGTACAGAGACCACCAGCACAACTCTGAGATATGCCCTGATGCTGTTGATCAAACACCCCCAAATACAGG
Seq C2 exon
AGCAAATGCAGAGGGAGATAGATCGCGTTATTGGACAGAACAGAATTCCTACAATGGAGGACAGAAAGTCTCTCCCCTTCACTGATGCTGTGATTCATGAAGTGCAGCGCTATATGGACATTGTGCCTCTAAGTCTTCCCCACTATGCCATGAAAGACATCACTTTCAGAGGCTATAAAATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101423-'7-8,'7-6,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.095
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTAGAAAACATCCGGACCT
R:
TGGGGAAGACTTAGAGGCACA
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]