RnoEX6001779 @ rn6
Exon Skipping
Gene
ENSRNOG00000020827 | Cyp2g1
Description
cytochrome P450, family 2, subfamily g, polypeptide 1 [Source:RGD Symbol;Acc:2477]
Coordinates
chr1:83632425-83636129:+
Coord C1 exon
chr1:83632425-83632601
Coord A exon
chr1:83634474-83634615
Coord C2 exon
chr1:83635942-83636129
Length
142 bp
Sequences
Splice sites
3' ss Seq
ACTACCTCCTTCATTTTCAGGAT
3' ss Score
12.08
5' ss Seq
AGGGTAAGT
5' ss Score
10.45
Exon sequences
Seq C1 exon
TTATATGATATGTACTGGGGAGTCATACAGTATTTTCCAGGAAGACACAACCGCCTCTACAACTTGATAGAAGAGCTTAAGGACTTCATTGCTTCCAGGGTCAAGATCAATGAAGCATCCTTTGACCCCTCAAATCCTAGGGACTTCATCGACTGCTTTCTTATTAAGATGTACCAG
Seq A exon
GATAAAAGTGACCCACACTCAGAATTCAACCTCAAGAACTTGGTTCTCACCACCCTCAACCTCTTCTTTGCTGGCACGGAAACTGTGAGTTCCACACTACGATATGGATTCTTGTTGCTAATGAAGTACCCCGAGGTGGAGG
Seq C2 exon
CCAAGATCCATGAGGAGATTAACCAGGTGATTGGAACACACCGTACCCCAAGAGTGGATGACCGGGCCAAGATGCCCTACACTGATGCTGTCATCCATGAGATACAGAGATTGACAGATATTGTGCCTCTGGGTGTTCCCCATAATGTCATACGGGACACTCATTTCCGAGGCTACTTCCTACCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020827-'6-12,'6-10,7-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.071
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
PF0006717=p450=FE(10.3=100)
C2:
PF0006717=p450=FE(13.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCATCCTTTGACCCCTCA
R:
GGGTAGGAAGTAGCCTCGGAA
Band lengths:
251-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]