BtaEX6082791 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026263 | ZNF45
Description
Bos taurus zinc finger protein 45 (ZNF45), mRNA. [Source:RefSeq mRNA;Acc:NM_001076213]
Coordinates
chr18:52437081-52440353:+
Coord C1 exon
chr18:52437081-52437153
Coord A exon
chr18:52438361-52438418
Coord C2 exon
chr18:52440227-52440353
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTCTTCTCCCATCAGGCC
3' ss Score
11.48
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
CTGAGGAGAGGCACAGAGGTGGAGGTGATCAGACCAGCGTCACACCACTCGTACGACACTAGATTCTTCACAG
Seq A exon
GCCTTCCCAAGACTCAGCAGTTCCCCAGAAGGAAGAGGAAAAAATGTCCAAGTTCAAG
Seq C2 exon
GAGGCAGTGACCTTCAAGGATGTGGCCGTGGTCTTCACAGAGGAGGAGATGGGGCTGCTGGACTTGGCCCAGAGGAAGCTGTACCAGGAAGTGATGCTGGAGAACTTCCGGAACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026263-'7-10,'7-5,10-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACACCACTCGTACGACAC
R:
CCGGAAGTTCTCCAGCATCAC
Band lengths:
146-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]