MmuEX0053700 @ mm9
Exon Skipping
Gene
ENSMUSG00000074282 | Zfp94
Description
zinc finger protein 94 [Source:MGI Symbol;Acc:MGI:107610]
Coordinates
chr7:25094090-25097514:-
Coord C1 exon
chr7:25097401-25097514
Coord A exon
chr7:25096484-25096522
Coord C2 exon
chr7:25094090-25094216
Length
39 bp
Sequences
Splice sites
3' ss Seq
TTTCACTGTGCCTTCTTAAGACC
3' ss Score
5.9
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGCAGCAGAGAGACAAGGCTTGGGATGTTGGCTCTGGGGTGAGGCTGGGTTCAGGAACCCCACCTGCCTCTGCTTTCACCTGCGCGTGGGTGCAACAGCTGCCATCTTTGTTG
Seq A exon
ACCCAGCCATCCCCCAGGAGGACAATGACCAAGGTCAAG
Seq C2 exon
GAGATGGTGACCTTCAGGGACGTGGCCGTGGTCTTCAGTGAGGAGGAGCTGGGGCTGCTGGACGCTGCTCAGAGGAAGCTGTACCACGATGTGATGCTGGAGAACTTCAGGATGCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074282-'5-9,'5-4,6-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=97.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAAGGCTTGGGATGTTGG
R:
CGTCCCTGAAGGTCACCATCT
Band lengths:
125-164
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: