BtaEX6083540 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013926 | FCGRT
Description
Bos taurus Fc fragment of IgG, receptor, transporter, alpha (FCGRT), mRNA. [Source:RefSeq mRNA;Acc:NM_176657]
Coordinates
chr18:56416215-56417223:+
Coord C1 exon
chr18:56416215-56416301
Coord A exon
chr18:56416593-56416841
Coord C2 exon
chr18:56416948-56417223
Length
249 bp
Sequences
Splice sites
3' ss Seq
TCTGCTTTCTTCGCCGGCAGAGA
3' ss Score
8.51
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCTCCCACTCAGGATGCGGCTTCCCCGGCCTCAGCCCTGGGGGCTCGGTCTGCTGCTCGTCCTCCTGCCTGGGGCGCTGAGCGCAG
Seq A exon
AGAACTATCGCTCGCTCCAGTACCACTTCACCGCCGTGTCGGCCCCCGCAGCGGGGACCCCTGCTTTCTGGGTTTCGGGCTGGCTGGGGCCCCAGCAGTACCTGAGCTACAATAATCTACGGGCGCAGGCTGAGCCCTACGGCGCGTGGGTCTGGGAAAGCCAGGTGTCCTGGTATTGGGAGAAAGAGACCATGGATCTGAGGAACCAGGAGACGCTCTTCCTCGAAGCGCTCCAAGCTTTAGGCGAAG
Seq C2 exon
GCCCCTTCACCATGCAGGGCCTGTTGGGCTGCGAGTTGGGCCCTGACAATGTCTCGGTGCCGGTGGCCAAGTTTGCCCTGAACGGCGAGGAGTTCATGATGTTTGACCCCAAGCTGGGCATCTGGGATGGTGACTGGCCTGAGTCCCGGACTGTCAGTATCAAGTGGACGCAGCAGCCAGAGGCGGTCAACAAGGAGAAGACCTTCCTCCTCTACTCCTGCCCACACCGGCTGCTGGGGCATCTGGAGAGGGGCCGGGGCAACCTGGAGTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013926-'2-6,'2-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
PF0012913=MHC_I=PU(48.0=97.6)
C2:
PF0012913=MHC_I=PD(51.5=94.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCCCACTCAGGATGCGG
R:
GGCAGGAGTAGAGGAGGAAGG
Band lengths:
308-557
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]