RnoEX6002632 @ rn6
Exon Skipping
Gene
ENSRNOG00000020583 | Fcgrt
Description
Fc fragment of IgG receptor and transporter [Source:RGD Symbol;Acc:61811]
Coordinates
chr1:101094234-101095594:-
Coord C1 exon
chr1:101095323-101095594
Coord A exon
chr1:101094721-101094978
Coord C2 exon
chr1:101094234-101094509
Length
258 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTCTTTCCTCTGCAGAGC
3' ss Score
12.42
5' ss Seq
ATGGTCAGA
5' ss Score
3.59
Exon sequences
Seq C1 exon
AGTTCTGTAATTAATTAACTAACGTGGATCAAATGAGAAGGTGAAAGTTCACACAGGAGCACTCCTGTCGTCTTGGACTGGGTCTCCATCCCACCATCCAGTGCCCTGGTCTACGAAGAGTCCACAGGGACCTTGTGAAGAATCAACAAGGCGGGGTCCAGAGGAGTCACGTGTGCCTTCCACTCCGGGTCGCCCTGTCAGGATGGGGATGTCCCAGCCCGGGGTCCTCCTCAGCCTCTTATTGGTCCTCCTGCCTCAGACCTGGGGAGCGG
Seq A exon
AGCCCCGTCTCCCACTGATGTATCATCTTGCAGCTGTGTCTGACTTATCAACGGGGCTTCCCTCTTTCTGGGCCACGGGCTGGCTGGGTGCTCAGCAATATCTGACCTACAACAACCTGCGGCAGGAGGCTGACCCCTGTGGGGCCTGGATATGGGAAAACCAGGTGTCTTGGTATTGGGAGAAGGAGACCACGGATCTGAAAAGCAAAGAACAGCTCTTCTTGGAGGCCATCAGGACCCTGGAGAACCAAATAAATG
Seq C2 exon
GGACCTTCACACTGCAGGGCCTGCTGGGCTGTGAACTGGCCCCTGATAATTCTTCATTGCCCACGGCTGTGTTTGCCCTCAATGGTGAGGAGTTCATGCGGTTCAACCCAAGAACGGGCAACTGGAGTGGGGAGTGGCCGGAGACAGATATCGTTGGTAATCTGTGGATGAAGCAACCTGAGGCGGCCAGGAAGGAGAGCGAGTTCCTGCTAACTTCTTGTCCTGAGCGGCTGCTAGGCCACCTGGAGAGGGGCCGTCAGAACCTGGAGTGGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020583-'3-3,'3-0,7-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
NO
A:
PF0012913=MHC_I=PU(48.9=97.7)
C2:
PF0012913=MHC_I=PD(50.6=94.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATCAACAAGGCGGGG
R:
AACGATATCTGTCTCCGGCCA
Band lengths:
292-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]