BtaEX6084023 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016513 | ZNF331
Description
Bos taurus zinc finger protein 331 (ZNF331), mRNA. [Source:RefSeq mRNA;Acc:NM_001103251]
Coordinates
chr18:61027589-61032896:-
Coord C1 exon
chr18:61032848-61032896
Coord A exon
chr18:61030850-61030921
Coord C2 exon
chr18:61027589-61027673
Length
72 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTTTCTTTCCTCCAGGCC
3' ss Score
13
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
CTGCACGCCTGCGCTCCCTCCCTGCCTGTTAGTTGTTGGGCCCAGAGCG
Seq A exon
GCCAGCTATCCTCCAGAAAAAGCATCCTGAAGAAGAAGACAGATTATCACAGATCTTCACATCAAGTCCCAG
Seq C2 exon
ATCTGGCATCTCTGGATTTTGTGTCTTCAGTAAGGGCGACCCCAGGAGCACTGATCAGTCCTTGAATTCTAGAACTATGGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016513-'0-4,'0-0,8-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCTCCCTGCCTGTTAGTT
R:
TGGGCCATAGTTCTAGAATTCAAGG
Band lengths:
120-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]