HsaEX0074348 @ hg19
Exon Skipping
Gene
ENSG00000197782 | ZNF780A
Description
zinc finger protein 780A [Source:HGNC Symbol;Acc:27603]
Coordinates
chr19:40590652-40596832:-
Coord C1 exon
chr19:40596813-40596832
Coord A exon
chr19:40596073-40596142
Coord C2 exon
chr19:40590652-40590705
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTTGCCGTATCCTTCTCCAGTCG
3' ss Score
8.24
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGGGTCGACGACATAGCGGG
Seq A exon
TCGTATTTTTATCCAAAAGAAGGACCTGGAGGAGGATGAGAGCGTTACTGCTGCACACCTAAAGTCAAGG
Seq C2 exon
GGGAGAAGCCCGAGGAAGATTGACCAGTTTTGTAATTCTAGCAACATGGTCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197782-'0-4,'0-1,2-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTCGACGACATAGCGGG
R:
TGGACCATGTTGCTAGAATTACA
Band lengths:
72-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)