HsaINT0188371 @ hg19
Intron Retention
Gene
ENSG00000197782 | ZNF780A
Description
zinc finger protein 780A [Source:HGNC Symbol;Acc:27603]
Coordinates
chr19:40596073-40596845:-
Coord C1 exon
chr19:40596813-40596845
Coord A exon
chr19:40596143-40596812
Coord C2 exon
chr19:40596073-40596142
Length
670 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
CTTGCCGTATCCTTCTCCAGTCG
3' ss Score
8.24
Exon sequences
Seq C1 exon
ACTTCCGGTCTCCGGGGTCGACGACATAGCGGG
Seq A exon
GTAAGGTCTTCACGTCTGAGGAAGAGATCTGTGGCTGCGGGAGATCTCTGCGGATTGGGGCTCCAGCCTGACTGACCCGACAGTGCGGGTGGCCTAGGGGGAGGCGCTCAGAGTAGGAACCCGGGGGTGCAGACGGGATCTGCCGGATCCCCAGGCGTGTGTGTGCGCGGGTATCAGAGGAGGGGGATTGTGAGATCATGAGTGACGGAGGGGACTGTGAGTGTGTGCGTGAGGTTCTATGCACAGGCCCGGGAGGGCGTGTGGACGCAGCGCACTTTGCTGAGTGACACTGTGCCGGTGCCCCTAGGCTCCTGCTGCTTCCTCCCTCTTTCCGCTTCACAGCTGCGGGGACTGCAGCAGAGGAATGGCCCCAGTAGGGAGGTCAGATATTGAGCCGAGAATGAAGCTTTACACAAGAAAGCGCAGAAGTGCCCCCGAGTGTTCCCCAGGGGGGCAGCTACATGTTGAGAACCACAGCGTCCTCAGAGCTCTGTCCCCAGAAACCAGCTCCAAACTGGTTGTACTGGTTGAATCGATTCCTCTTCCTTTTACTTCCTTCCTATTTCGTGTGAAGTGAGGGAAATTGTGGCTATGGAGGGAGGGTGTTTTCAAACTTAGTCTGCGCTCCAAGAAATGCCTGGAGTCTCACGCTTGCCGTATCCTTCTCCAG
Seq C2 exon
TCGTATTTTTATCCAAAAGAAGGACCTGGAGGAGGATGAGAGCGTTACTGCTGCACACCTAAAGTCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197782-ZNF780A:NM_001142579:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)