BtaINT0165291 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016513 | ZNF331
Description
Bos taurus zinc finger protein 331 (ZNF331), mRNA. [Source:RefSeq mRNA;Acc:NM_001103251]
Coordinates
chr18:61030850-61032896:-
Coord C1 exon
chr18:61032848-61032896
Coord A exon
chr18:61030922-61032847
Coord C2 exon
chr18:61030850-61030921
Length
1926 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
CTGTCCTTTCTTTCCTCCAGGCC
3' ss Score
13
Exon sequences
Seq C1 exon
CTGCACGCCTGCGCTCCCTCCCTGCCTGTTAGTTGTTGGGCCCAGAGCG
Seq A exon
GTGAGTAATTAGCATCCCGGGAGGAAACCTGAAGTGGAAGGCAATGGGCGGTGGCGGTGAGGGAAAAGGCCAAGAGCCCCGAAACGGAGCGTCGGCCTGTGGCTTCGGGAGCCGCTGCGGAGGGAGTGCGAGCGTGTGCGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGATGGGGCTCGGCCTTGTCTACAGACTAAGGTGCGCGTGGGCGTAGGTGAGGGACACGGGCCGGGTCCCTGCGGTTGTGACGCACTTGCGCGTGAGTGTGTGAACGGGGGAGGCGACCCGGCCCCATCCCTGCGGCTGTGCCCCCCCACCCATCCCCGGTGCGTGTGAGCCTCGGGCTCGGACGCCTCCGCTCCGCGTGAGTTCCACGCGCGTGGGCTCTGGCGGGGACGGCGGGGCTGAGAGAGCCGCCTTGACGTGTCTGTGGGATTGGCGGAGCCGGGCGCCGTGTCTCTGGCGGGGGCGTCAGGCGGTGTGTCGCAGCCGCGGTGTGTGAGTTTGTTCAGCTGTGACAGGTGCAGGCTGGCCCCCGGGTGTGTGAGCACGGGGAGGGGGTGTGTGACGGTATCACCTGTAGCTCCGGTGTCTCCGCTGGTCCCTCCGCCCTCACGTTCCCACCGTGCAGTACTTGCGGGGGCACAGCGGCCTCCAAGAGACGTGGGAGCCCGAACCCTTTAATGAAAAGAAAATGACAGGAATTAACACAGGTCTCGTCATGAGATGGCGGCAGATGAGCTAGAGGTGCCGTCCTTCTAAAGTCCAGGCCACCTGAGTGACAAGATGGAAGGGTCTCGGGGCGGGGGAGGCGGAGATTCTGTTTTGAAAGGGAGAGGTCCCTGACCTGGGAGGTGCGGGGACGGGGTGGCGGGGTACCCCCAATTAGTAGAGCCTAGTCTCCCGGAATCTCTGAAATACATCTGGGTGCACCCTTCTTGTTTTTGGTGCTTTTTTTCTTTTTTTGAGTATAATTGCTTTGCAATGTTGTGTTAGTTTCTGCTATACAACGAAGTGGATCAGCTGTAAGTATACTTATATCCCCTTCCTCTTGGACCTGCCTCCCAGGACCCCCACCAGTCCCACCCCTCTAGGTCATCACAGAGCACCAAGCTGAGCTCCTGTGCTATACAGCAGCTCCCCCTGGTTGTTTTACACTTGGTAGTGTGTGTATGTCAGTCCTAATCTCCCAGTTCGTCCCACCCACCTCTCCCTGCCCCAGCTCTGTGTCCACATGTCCATTCTGTAGGTCCCTGTCTCCATTCCTGCCCTGGAACTAGGTTCATCTGTACCATTTTTCTAGATTCCACACATATGCATTAATATATGATAATGGTTTTTCTAACTTCACTCTGAGAGACTGTAGGTCCATCCATGTCTCTACAAATGATCCAGTTTCATTCCTTTTTATGACTGAGTAATATTCCACTGTACATATGTACCACATCTTAGATGCGGTCTTGGAGGGTATTTTCTCTCTCTCTCTCTCTTTTTTTTTTTTTTAAGCTTTATAAAGACTTATGCTCTCACCCAGGGTTGGGCCCATGCTTTCCTTAAAATTAATTTTAGCTCTTTAATTAGATTTTTCTGTGTGAAGCTCACTGCTTAAAGTCTATTCTCTTTAGGAAGGATGAAAATATCTCTTTATGGCCTTTAACTATGTAACTTCTATTTTTCAAGACTGACACAGCTTTCCCTCAAAGGGTTTGGTTCAAAACTACTGGTGTGAAATAGCTGAACTTAAGCAGGCAACAAAAAAGTACAGTTATGTATCAGGGAGTATAGTTTTTGGTTTGCCAATTTGGTCTTTGAGGAAAGCAATTACTTCATTTGGAGACTGGAAATGGGAGGGTATTTCCTGATGTAGTCTGTGCTCCGGAAAGGCCCCAGCGTCTCATTCTGTCCTTTCTTTCCTCCAG
Seq C2 exon
GCCAGCTATCCTCCAGAAAAAGCATCCTGAAGAAGAAGACAGATTATCACAGATCTTCACATCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016513:ENSBTAT00000021950:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development