HsaINT0188372 @ hg19
Intron Retention
Gene
ENSG00000197782 | ZNF780A
Description
zinc finger protein 780A [Source:HGNC Symbol;Acc:27603]
Coordinates
chr19:40595167-40596142:-
Coord C1 exon
chr19:40596073-40596142
Coord A exon
chr19:40595322-40596072
Coord C2 exon
chr19:40595167-40595321
Length
751 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TTCCCCTTGACTCTCTACAGAAC
3' ss Score
9.33
Exon sequences
Seq C1 exon
TCGTATTTTTATCCAAAAGAAGGACCTGGAGGAGGATGAGAGCGTTACTGCTGCACACCTAAAGTCAAGG
Seq A exon
GTGAGTTTGTGCTTTGTATTTGTTCAAGACATGCGTTTTTGATTTTAGAATATTGAGATTTCCCCTTAAATTTTCAGTGAAACTAGGGGGATATGCAAATTGATTCGTGCCCCCTCCTTCACCTTTCCACTTAATAGTCACAAAACAATTTGGCAAATCGTTCACACCTTCCTGTGCGCTCTCTTTTTCGAAGCTGGTATAGAAATACACCTCCAGTAGTTAATATTAAAGCTCCATTTTAGACCCATATTTGGGAAGGAGGAGATTAGTGTTTAGGTGGAATCACACACTAGACATCAGTTGGTCTTTACAGACCTCCTTTTCAAAACAGGGAAGAATGGAGATGGTTGGATGATCTCCATTGCCTGTGAGGCATTCGGTAGTGGAAAAGTGACCGCACAGAAATTGGTATCAACAAGAGCCAGGATTTTTCCAGGGAGTCCATGAGATGATATTTGTAATACTTGCCAGATCTCTCTGAGGTTTGGCAGCTCCAGTTGTGTTTTAGGCGTGTGTGTGTGAGTGTGTGTGTGTGTGTGTGTGTGTGTACTGTGAGAGGCAGTACACTGTTGTGGTTAAGAATAGGGGAGTGGATCCAGAGTATCTGGGTTGGAATATTGGTTCTGTCATTAGAATGAATTAATATCGTAAAGCCCCTTAGAGCAGTGCTAGGCATATAATAATGTTTAATATGTTTTAACTGTTGTTTTTTGTGTAGTCATTTTAAGTCATTCCCCTTGACTCTCTACAG
Seq C2 exon
AACAGGAGCATTGGGAATATGTGATTCATTGCGACTGCTGGTTGTATATTAAGAAAATGAGTGAGGGGCTCAAATGATCTAGGACAGAAATTCTTTCTTTTTAAATCGACAGATATAATTGTATGTATTTATCATGTGCAACATGAAGTTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197782-ZNF780A:NM_001142579:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)