BtaINT0165292 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016513 | ZNF331
Description
Bos taurus zinc finger protein 331 (ZNF331), mRNA. [Source:RefSeq mRNA;Acc:NM_001103251]
Coordinates
chr18:61027589-61030921:-
Coord C1 exon
chr18:61030850-61030921
Coord A exon
chr18:61027674-61030849
Coord C2 exon
chr18:61027589-61027673
Length
3176 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
GCCTCGTTTTCCTCTTGTAGATC
3' ss Score
10.98
Exon sequences
Seq C1 exon
GCCAGCTATCCTCCAGAAAAAGCATCCTGAAGAAGAAGACAGATTATCACAGATCTTCACATCAAGTCCCAG
Seq A exon
GTGAACTTTTTGTTCAGTAAATGACCTGAATCTTTAGCACTTAAGAATATTTGCTTTCCTTGACCTGAAATGTCCTCTGTATTAACTCAGTAATTGCTTCCCAAGCAGTTGTGCAGGTGTCTTCCCCATTGACCAGCCCTCTCCCATGAGTACTCACGTATTCAGTAGGCAAATTGTTCACATCCTCCTGTGTGATCTTCTAAGAATCCAATAGGATCGAGGGATACCACTGGGAGGTTAATGTTAGCAGTTTTAGCATGTGATATGATAATATAATATCATTATGATATTAATTTTTAGGTGGAATCAAAGGCTACATATCTTTGGTCTTTTGCACAGCACTGACTTTCAGAGCACAGTAAGAAAGGAGAAGGGTTTGATTATTTTAGTCAGTTAATGACGAAGTGTTCAGCTTTGTGAGGTTTTTTAGAATGGAGTTTGAGCAAAGGTCTTTGTCATTGAAGGCAAGGTTTTTTTTTCCTCTAGTAATCAGTAAATAGAAATTTGTTGTATCAGCTAGGTCTTATTTGAGGTCTGACAGTTTCAGTTACATCTTTTTACGAATGATGAGAGGCAGTATGGTTTGATGATGCGTGTGGGTTCTGGATCTCGAGCAGGGTTTGGCAAACCTTTTCTCTAAAGGGTCACATATTAAATATTTTGTGGTTTGTGGGCCACATGTGGTTGCAAATTGTTCTTTTTAATAGATTGTATTCTTTAGAACCATTTTACTTTTTTTTTCCAGTTAGAACAATTTTAGTTTTACAGAAAAATTGCAAAGAGTACACAGAATTCCCAGGTGCCCTGCACCCAGTTTCTCCTATTATTTACAACTCATATTAGTATGGGATATTAGTTACAATTAATGAACCAGTTCTGGAACCTTACTGTTAACTGAAATCCATGCTTTATTCAGGTTTCCTTAGTGCTTTTTTTTTAAACAGTTTTGACTACGTTTATTTATTTAGTTTTTTGTTATTATCTGGCTGCAAGGCATGTAGGATATTAGTTCCCCCACTAGGGATCGAACCCTCACACCCTGCAGTGGAACTGCCAACATCTTGACCGCTGGACCACCAGGGAAGTCCCACAGGTTTCCCTAGTTTTTAAACAGTGGTTGTCATCTGTGGGATCCTGGGATCCCATCCAGGACACCACAAAGTCATGTAGTCGTGTCTCCTTAAGCTCCTCTAGGCTCTGTTGATTTCTCGTACTTCCCTTGTTTCTGACAACATTGGTGGTTTTAAGAGGAACTGGTCAGGTATTTTGTAGGCTGCCCCTCTGTTGGAATGAGGTTTTCCTCATAAGCTTATGCATTTACGGGTTTGGAGAATTCTGGGTGATGTACCCTGAGAGCTGCTAGGAAGAGGGCTTCATTCTCATGATGTCAGATCATAACCAAAGTACTTCCAACTGACGGATTCTATGTGTCAATAAATGAATTTATTTTCTATGTTTTATACCTTACATATTTTCTTCTAATAGCATTGCATGCAACGAGAACACTAACAGGGTTAGGTTATTTAGTGTTTATCTACAGGACACTGGCTGAAGGACAGATTCAAAAGCAGAGTTCACCCTCCCTTCAAGACTAAGACTAAGCAGCATCAAGGTACTTATCAGTATCTGCGGGGCATCTTGGCATTTTAGCCATTTTTTTCCCAGTCAGTCCTCCAATGTATGTGGGAGGATGTAGACATCACAGAGTTGGTTTAGGTATTAGGAAGTAAAAAGAAATGAGATGTTATTCAGATTAAAAAAAAAAAAATCCCCAAAATAAGGTATTCAGAGATATTTCTGCAAGTTCAAGAGGTCCTCTTTGAAAAAGAGAGTGGAACTTTATCTTTTGAGAATCTGTCTCAACATGTATGTGTGTTTATATAGATACAGATATCTTGATTATGGTGTGTATTGTATATAAATATGTATATATGCATATTGAGAAACATCGTTTCGATAGCCTGATTTTCCTACTGACAATATAACCTGAAAATTTGTTCATGTCTTCAAGTATTTCTTCTGACTTAGCATTGAATAGCCCTCTAGTACATTTTCACTTTGATATTCTGCATGTATTTATGCAGCCAGCTTTGCTGGATTCCAAATGCCAGACCCTATCTGGGTAGTTCTCTCTCCGCCTTGTCCGCCTGCCAAGTCCTGGTGACTTCACCCTGACCACAGGCCGGAAGAGCTCGAGTTGGCATGGTGCAGCCCCTCCCACCCTGGATGGTGTGAATGACAGTAACGGGCCCTCTGCCCAGAGTCCCCCAGCCTCCATCAGTGAAATTTGAGGGCCTGGTCTCCACACAAAACCCCCCTCTGTCATCACACCAAAGGTAGGTTCAGGAGCTTCCCTAAACCACCCTGAGGTTTCATAACTCAGGACTAGAAGGGACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGACGCCAGCTATTGTGCCAACATCAGCGAGTGACAGTATGCTCAGAGTACTGCCAGCCAAGGAAGCACACCTGAGCTTCAGTGTTTGGAGTTTTCACTGCGGCTTCATCACATGGACATAATTGATTGGTCCTGTGGACGTAGGTGATTGATTTGTTGTCCAGATGTTGATCTCAGTCCCCAAGTCAACTCATAGCCCATGACCCATGGTCTCCCCATCCCCACCCATCACCTGAGTGGTCTTCCTGGTATGGCCAGCTCCCACCCTAAGGTGTGGTGTGGCCTGCCCCTACCCACACAAAGACATCCCTGTTATGTGCAATGTCCATTACCTCTCAGAGGCTGAGGGCCAAGGCCGCACCTCTCTTTGGTCAAGGCCGGATTTTCAACCATATCCCTCACCAGGGAGCTGGCCAGGAATCCTCCCACTCCAGTGTCAGATCTAATTTCAAGACATAAAAGCTCCTCTGCCCCATCAGCTGGGTTTCCTGGAGTTTCAGGGAGAACTTGATTTTTCCAGAACCCTTTTAATCTTCTCCAGGTGTGTTTTTGTGGGGGAGCTTGTAGGGGAAGAAGATGGGGTTCTTTGGCAGTGAAGGTAGAGGAGTGAGAAGGCTGTACTAAGTCATTTGGGGACCAGGGTGCACTTATTTTCACGCCTCGTTTTCCTCTTGTAG
Seq C2 exon
ATCTGGCATCTCTGGATTTTGTGTCTTCAGTAAGGGCGACCCCAGGAGCACTGATCAGTCCTTGAATTCTAGAACTATGGCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016513:ENSBTAT00000021950:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development