BtaEX6084460 @ bosTau6
Exon Skipping
Description
Bos taurus zinc finger protein 419 (ZNF419), mRNA. [Source:RefSeq mRNA;Acc:NM_001101932]
Coordinates
chr18:64874737-64878298:+
Coord C1 exon
chr18:64874737-64874863
Coord A exon
chr18:64875329-64875427
Coord C2 exon
chr18:64876712-64878298
Length
99 bp
Sequences
Splice sites
3' ss Seq
CTGCCTTGTTCCTTCTGTAGGAC
3' ss Score
11.17
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGCCAAGTGACCTTTGAGGACGTGGCTGTCTACTTCTCCTGGGAGGAGTGGGGGCTCCTTGATGAGGCCCAGAGGCTCCTGTACTGTGGGGTGATGCTGGAGACCTTCTCACTGATGGCGTCTCTCG
Seq A exon
GACTCACACCGTCCAGGACCCATGCCATGACTCAGCTGGAGCAGCGGGGGGAGCCCTGCGTGCCTACCGGGGGAGTCTCAACCACAGCCACACCAGCAG
Seq C2 exon
GTTGTTGGTGCGGAGCAGAGGCTGACGAGGCCCCTTCCGAGCAGAGTGGTTGTGTAGAAGCCGACAGAGCAAACCTTCACCAGCACCAGGACCCGAACTCTGGAGAGAAACCTTCAACCAGAGAAGAGCATGAGGGGAACGGGAAGGTCTCCCCAGGAAGCTCTGGTCTTCCCAAGCCTCAGGCGGCTCCTAGTGGAGGGGAGCCATGTAGGAGCACCAAAAGTGGGGAGGGCGTTCCCCCTGGGAAAAGGCATTACAGGTGTAGTGAGTGTGGGAAAGCCTTTGGTCAGAAATACTTACTTGTTCAGCACCAGAGACTACACACGGGAGAAAAGCCTTATGAATGCAGTGAATGTGGGAAATTATTCAGCCATAAATCCAACCTTTTTATACACCAAATAGTTCACACTGGTGAAAGGCCTTACGGGTGTAGTGAATGTGGAAAATCCTTTAGCCGCAATGCTGACCTCATTCAACACCGGAGAGTCCACACTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017613-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.676 C2=0.197
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=6.7),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF0013017=C1_1=WD(100=13.7),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0),PF134651=zf-H2C2_2=WD(100=7.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAGTGACCTTTGAGGAC
R:
TACACAACCACTCTGCTCGGA
Band lengths:
183-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]