MmuEX6008358 @ mm9
Exon Skipping
Gene
ENSMUSG00000066838 | Zfp772
Description
zinc finger protein 772 [Source:MGI Symbol;Acc:MGI:2385265]
Coordinates
chr7:7154833-7159083:-
Coord C1 exon
chr7:7158957-7159083
Coord A exon
chr7:7158224-7158310
Coord C2 exon
chr7:7154833-7157070
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTGTATCATGTCCTTTAGGAC
3' ss Score
9.2
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GACTGCTTATCCTTTGAGGATGTGGCTGTGTACTTCTCCTGGGAGGAATGGACACTGCTTGATGACTCTCAAAGGCTCCTGTACCAGACTGTGATGTCAGAGATCTTAACACTCATGTCTTCTTTGG
Seq A exon
GACTTATACCTTCTGGGATCCATGAGATGACTCAGCTGAAGTCTTGGGGAGAGCCCTCTGTGCCTGCGTTGAGATTCCTGACTCCAG
Seq C2 exon
GTTGTTGGATCAAAGTGGACAGTGAAATGTCACCCTTTGAGCAGAGTCCGTCTGCAGAAGGTGCCAGGCCGTCCACCCTACAACAGCACATGCTGTGCTGTGCTGAGACACCCGTGCTAAGCATGGACAATGTGATGATCCTCCAGACCTCCTCGGGTCTTCTAAGGCATCAAGTGACTTATAATGTTGGGGATGCCCCCATGAACATGGAGAGTGGAGAGGCCATTCAGAGTGAGAAGAAGAACTGCATATGCAGTGACTGTGGCAAAACTTTTACTAGCACATCCCACCTCAATCGACACCGGATGATACACACTGGAGAAAAGCCTTTTCAGTGCAGCGAGTGTGGGATGTCCTTCAGCCAAAAAGCCTTTCTTATTAAGCATTTCAGAATTCACACCGGAGAGAAGCCATTCAGGTGTGGGGAGTGTGGCAAAGCCTTCAAGCATAATATCTCCCTCGTATCTCACCAGCGAGTTCACACAGGAGAGACGCCTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000066838-'4-3,'4-2,5-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.8),PF132401=zinc_ribbon_2=WD(100=12.1),PF134651=zf-H2C2_2=WD(100=8.5),PF134651=zf-H2C2_2=WD(100=8.5),PF0013017=C1_1=WD(100=20.5),PF134651=zf-H2C2_2=WD(100=8.1),PF134651=zf-H2C2_2=WD(100=7.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCCTGTACCAGACTGTGA
R:
CATGCTTAGCACGGGTGTCTC
Band lengths:
179-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: