BtaEX6085567 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015979 | SEZ6
Description
seizure related 6 homolog (mouse) [Source:HGNC Symbol;Acc:HGNC:15955]
Coordinates
chr19:20882800-20883671:-
Coord C1 exon
chr19:20883477-20883671
Coord A exon
chr19:20883088-20883226
Coord C2 exon
chr19:20882800-20882996
Length
139 bp
Sequences
Splice sites
3' ss Seq
GCGGTTCCCCTGCCTTCCAGCCG
3' ss Score
7.61
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CCTTCCAGCAAGGCCATTGCTACGAGCCCTTTGTCAAATACGGCAACTTCAGCAGCAGCGCACCCTCTTACCCTGTGGGGACCACCGTGGAGTTCAGCTGCGACCCCGGCTACACTCTGGAGCAGGGCTCCATCATCATTGAGTGCGTGGACCCCCACGACCCTCAGTGGAATGAGACAGAGCCCGCCTGCCGAG
Seq A exon
CCGTGTGTAGTGGAGAGACCACAGACTCGGCTGGCGTGGTGCTCTCCCCCAACTGGCCAGAGCCGTACGGCCGTGGGCAGGACTGCATCTGGGGCGTGCATGTGGAGGAAGACAAGCGCATCATGTTGGACGTCCGAGT
Seq C2 exon
GCTGCGCATAGGCACGGGTGACGTGCTAACCTTCTATGACGGGGACGACCTGACAGCTCGGGTCCTGGGCCAGTACTCTGGGCCCCGTGGCCACTTCAAGCTCTTTACCTCCATGGCTGATGTCACCATTCAGTTCCAGTCTGACCCCGGGGCCTCAGTGCTCGGGTACCAGCAGGGCTTCGTCATCCACTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015979-'11-17,'11-15,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(40.4=93.6)
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCATTGAGTGCGTGGACC
R:
GAAGTGGATGACGAAGCCCTG
Band lengths:
256-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]