DreEX6076569 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24561137-24584505:+
Coord C1 exon
chr15:24561137-24561331
Coord A exon
chr15:24565274-24565412
Coord C2 exon
chr15:24584309-24584505
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTGTTTGTATTGCAGCTG
3' ss Score
10.27
5' ss Seq
AGTGTATGT
5' ss Score
4.8
Exon sequences
Seq C1 exon
CTTTTGCAGCGGGGCATTGCTACGAGCCATTCGTCAAGTACGGCAACTTCACCACCACTGACAGCACCTATGCTGTGGGCACGGTTGTGGAGTTCACCTGTGACCCCGGATACACTCTGGAGCAGGGCTCCGTTATCATCGAGTGCATGGATCCCAGCAACCCTCAGTGGAACGAGACTGAGCCCACCTGCAGAG
Seq A exon
CTGTTTGCAGTGGTGAGATCACAGATTCAGCTGGGATGGTCTTGTCTCCAAACTGGCCTGAGGCCTATGATAAGGGTCAGGACTGCATCTGGGGCATCCATGTTGAGGAGGACAAAAGGATCATGCTGGACATCCAAGT
Seq C2 exon
TCTCCACATGGGAAAGAATGACCTGCTGACTTTCTATGATGGAGATGACCTGACTGCAAAGATACTGGGCCAATACAGCGGCTCACGGCCTCGGTTCAAGCTCTACACCTCTATGGCTGATGTGACCATCCAGTTCCAATCAGACCCTGCTACCAACATCTATGGCTACAACAACGGCTTTGTGGTGCACTTTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-'8-12,'8-11,9-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.015 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.9)
A:
PF0043115=CUB=PU(40.4=93.6)
C2:
PF0043115=CUB=PD(58.7=95.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGACCCCGGATACACTCT
R:
GCAGGGTCTGATTGGAACTGG
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]