BtaEX6086780 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28123452-28132042:+
Coord C1 exon
chr19:28123452-28123642
Coord A exon
chr19:28131511-28131702
Coord C2 exon
chr19:28131858-28132042
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTGTACGTCCTTGTCCCCAGGGC
3' ss Score
10.62
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GACACTGGGTATTCCTCGCCAACTGCCACCTGTCGCTGTCCTGGATGCCAAACCTGGATAAACTGGTGGAGCAGCTGCAGGTGGAGGATCCGCACCCTTCTTTCCGCCTCTGGCTCAGCTCCAGCCCCCACCCAGACTTCCCCATCTCCATCTTGCAGGCCAGCATCAAGATGACCACAGAGCCACCAAAG
Seq A exon
GGCCTAAAGGCCAACATGACTCGTCTTTACCAACTGATGACAGAACCACAGTTTTCCCGCTGCTCCAAGCCCACCAAGTATAAGAAACTGCTGTTCGCACTGTGCTTCTTTCACTCTGTGTTACTTGAACGCAAAAAGTTCCTGCAACTTGGCTGGAACATCATCTACGGCTTCAATGACTCTGACTTTGAG
Seq C2 exon
GTGTCAGAGAACTTGCTGAGCCTCTACCTGGACGAGTATGAGGAGACGCCCTGGGATGCACTCAAGTACCTCATCTCCGGGGTCAACTATGGTGGACACGTCACGGATGACTGGGACCGGCGCCTGCTGACCACCTACATCAATGACTATTTCTGTGACCAGGCTCTCTTGACCCCCTCCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'82-82,'82-81,83-82=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.9=100)
A:
PF0302810=Dynein_heavy=FE(8.9=100)
C2:
PF0302810=Dynein_heavy=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCCTGGATGCCAAACCTG
R:
TTGACCCCGGAGATGAGGTAC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]