DreEX6004699 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21326017-21328800:+
Coord C1 exon
chr7:21326017-21326207
Coord A exon
chr7:21326316-21326507
Coord C2 exon
chr7:21328616-21328800
Length
192 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTTGTGTCTCTGTAGGGG
3' ss Score
11.51
5' ss Seq
GAGGTAGAA
5' ss Score
4.54
Exon sequences
Seq C1 exon
GTCATTGGGTGTTTCTGGCTAATTGTCACCTGTCTCTCTCTTGGATGTGTGAGCTGGATAAGTTGGTAGATGAGTTACAAGTCCAGGAATGTCATCCAGATTTCCGGCTGTGGTTGAGCTCCTCCCCTCACCCAGAATTCCCCATCGCCATCCTGCAGACAGGCATCAAAATCACTACTGAGCCTCCCAGG
Seq A exon
GGGGTGAAGTGGAATATGAAGCGTCTCTATCAGCGGGTGTCTGAGACTCAGTTCCTGCGCTGCTCTCGGCCGCTGCTGTATCGAAAGCTGCTCTTCAGTCTCTGCTTCTTTCACAGCGTCATACTGGAGAGGAGGAAGTTCCTGCAGCTTGGTTGGAACATCATATACAGTTTCAACGACTCTGACTTTGAG
Seq C2 exon
GTGAGTGAGAATCTTCTGAGTCTTTATCTGGATGAGTATGAGGAAATCCCCTGGGACGCTCTCAAGTTCCTCATCGCTGGCATTAACTATGGAGGACATGTGACTGACGACTGGGACCGGCGTCTGCTCACCACTTACATCAACCAATACTTCTGTCCTGCTGTTATCGATACACCCTTCTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'80-85,'80-84,81-85=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(10.7=100)
A:
PF0302810=Dynein_heavy=FE(10.7=100)
C2:
PF0302810=Dynein_heavy=FE(10.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCATCCAGATTTCCGGCTG
R:
ATGTAAGTGGTGAGCAGACGC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]