RnoEX0028519 @ rn6
Exon Skipping
Gene
ENSRNOG00000052688 | Dnah2
Description
dynein, axonemal, heavy chain 2 [Source:RGD Symbol;Acc:1565087]
Coordinates
chr10:56031973-56038210:-
Coord C1 exon
chr10:56038020-56038210
Coord A exon
chr10:56032324-56032515
Coord C2 exon
chr10:56031973-56032157
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTGCGGTCCCTTGTCCTCAGGGT
3' ss Score
10.29
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GACACTGGGTGTTCCTGGCAAACTGCCACCTGTCACTGTCTTGGATGCCTAACCTGGACAAGTTGGTGGAGCAACTGCAGGTGGAGGACCCTCACCCTTCCTTCCGTCTGTGGCTCAGCTCTAGCCCTCACCCAGACTTCCCAATCTCCATCCTGCAGGCCAGCATCAAGATGACCACAGAGCCACCAAAG
Seq A exon
GGTCTGAAGGCCAACATGACGCGTCTGTACCAACTGATGACGGAGGCACAGTTCACGCACTGCTCCAAGCCCACCAAGTATAAGAAGCTCCTGTTTGCCCTCTGCTTCTTCCACTCCATATTACTCGAGCGCAAAAAGTTTTTACAGCTTGGCTGGAACATTATCTATGGCTTCAACGACTCTGACTTTGAG
Seq C2 exon
GTGTCAGAGAACCTGCTGAGTCTCTATCTGGATGAATATGAGGAGACGCCGTGGGATGCACTCAAATACCTCATTGCGGGTGTCAACTACGGGGGACATGTCACAGATGACTGGGATCGGCGCCTGCTCACCACCTATATCAATGATTATTTCTGTGACCTGAGCCTAACGACTCCCTCCTACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052688-'98-105,'98-104,99-105
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.9=100)
A:
PF0302810=Dynein_heavy=FE(8.9=100)
C2:
PF0302810=Dynein_heavy=FE(8.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCACTGTCTTGGATGCC
R:
CGTAGTTGACACCCGCAATGA
Band lengths:
254-446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]