BtaEX6086810 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008605 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr19:28093035-28093924:+
Coord C1 exon
chr19:28093035-28093253
Coord A exon
chr19:28093460-28093577
Coord C2 exon
chr19:28093788-28093924
Length
118 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTGTGTCTATTTTAGGAG
3' ss Score
13.09
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
CTGCGGGAGACCATTGAGCAGGAGATTCGGGACATGGGCCTGCAGCCCACCCCGTTCACCCTCACCAAGGTCATCCAGTTGTATGAAACCAAGAATTCCCGCCACTCCACCATGATCGTGGGCTGCACAGGCAGCGGCAAGACTGCCTCGTGGCGGATTCTCCAGTCCTCCTTGTCCTCCCTGTGCCGTGCCGGGGAGCCCAACTTCAACATTGTCAGG
Seq A exon
GAGTTCCCTTTGAACCCTAAGGCACTGTCCCTAGGGGAGCTGTATGGGGAATATGACCTCAACACAAATGAATGGACGGATGGCGTCCTGTCCAGTGTCATGAGGACGGCATGTGCAG
Seq C2 exon
ACGAGAAACCAGATGAGAAGTGGATCCTTTTCGATGGCCCTGTGGACACTCTATGGATTGAGAGCATGAACTCCGTCATGGATGATAACAAAGTGCTGACCCTCATCAACGGAGAGCGCATCGCAATGCCTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008605-'40-41,'40-40,41-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(25.7=50.7)
A:
PF077289=AAA_5=FE(27.1=100)
C2:
PF077289=AAA_5=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCAGGAGATTCGGGACAT
R:
CAGGGCCATCGAAAAGGATCC
Band lengths:
247-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]