DreEX6004729 @ danRer10
Exon Skipping
Gene
ENSDARG00000087352 | DNAH2
Description
dynein, axonemal, heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:2948]
Coordinates
chr7:21235022-21255815:+
Coord C1 exon
chr7:21235022-21235240
Coord A exon
chr7:21241036-21241153
Coord C2 exon
chr7:21255679-21255815
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTTTTGACCCTTTAGGAG
3' ss Score
9.04
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTAAAAGAAGCTGTAGAGGCAGAACTTCGACAGAGCGGCTTACAGGTGATTCCCTTCACCGTGACCAAGGTGATTCAACTGTACGAGACCAAAAACTCCAGGCACTCTACAATGATTGTAGGAAAGACGGGCAGCGGCAAAACGGTCACATGGAGAACCCTTCAGAACACCCTCAGCACCTTGCACCGCAATGGAGAACCAGGATTCAACCTCATACGC
Seq A exon
GAGTGTCCCTTAAACCCAAAGGCAGTGAGTCTGGGAGAGCTGTACGGTGAATACAACCTTTCCACCAATGAGTGGACAGACGGCGTCCTCTCCTCACTAATGAGGATGGCCTGTGCAG
Seq C2 exon
ATGAGAAGCCTGATGAGAAGTGGATTGTGTTTGACGGGCCAGTGGACACGCTGTGGATCGAGAGCATGAACTCTGTAATGGACGACAACAAAGTCCTCACACTCATCAACGGAGAGAGAATCTCCATGCCCGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087352-'43-47,'43-46,44-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PU(25.7=50.7)
A:
PF077289=AAA_5=FE(27.1=100)
C2:
PF077289=AAA_5=FE(31.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCAGAACTTCGACAGAGC
R:
GCCCGTCAAACACAATCCACT
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]