BtaEX6087173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30091792-30092569:-
Coord C1 exon
chr19:30092452-30092569
Coord A exon
chr19:30092018-30092141
Coord C2 exon
chr19:30091792-30091928
Length
124 bp
Sequences
Splice sites
3' ss Seq
TATTCTTTTTATTCTGACAGATA
3' ss Score
9.11
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
GGGCCATGGAGCACGAGCTGGTCCTGCACCAGCTGAGGTGTAATGGCGTGCTGGAGGGCATCCGCATCTGCAGGAAGGGCTTCCCCAGCAGAATCCTGTATGCGGACTTCAAACAGAG
Seq A exon
ATATAAGGTTCTAAATGCAAGTGCTATCCCAGAGGGTCAGTTCATCGACAGCAAGAAGGCTTCTGAGAAACTTTTAGGGTCTATTGACATTGACCACACCCAGTACAAATTTGGTCACACCAAG
Seq C2 exon
GTTTTCTTTAAGGCTGGCCTGCTGGGAATTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACACGCACTCAGGCCATTTGCAGAGGGTTCCTGATGAGAGTGGAGTTCAGGAAGATGATGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794-'16-17,'16-16,17-17=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGAGCTGGTCCTGCAC
R:
TCTCTCCATCATCTTCCTGAACTCC
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]