DreEX6026947 @ danRer10
Exon Skipping
Gene
ENSDARG00000079564 | vmhc
Description
ventricular myosin heavy chain [Source:ZFIN;Acc:ZDB-GENE-991123-5]
Coordinates
chr2:24608530-24609176:-
Coord C1 exon
chr2:24608971-24609176
Coord A exon
chr2:24608763-24608886
Coord C2 exon
chr2:24608530-24608666
Length
124 bp
Sequences
Splice sites
3' ss Seq
TTTTATGTACTTAATTACAGGTA
3' ss Score
8.67
5' ss Seq
AAGGTTATT
5' ss Score
4.15
Exon sequences
Seq C1 exon
GAAAACTTAAATAAGTTAATGACAAACCTAAGGTCAACTCACCCTCATTTTGTGCGCTGCATCATTCCTAATGAGACAAAGACTCCTGGTGCAATGGAGAATCCTTTGGTCATGCATCAGCTGCGCTGTAATGGTGTGCTGGAGGGCATCAGGATTTGCAGGAAGGGCTTCCCCAACAGAATCCTCTATGGGGACTTCAAACAGAG
Seq A exon
GTACCGAATCCTAAATCCTGCAGCCATACCTGAAGGTCAGTTCATAGACAGCAGGAAAGGAGCAGAGAAACTGTTGGGTTCACTGGATATTGATCACAATCAATATAAATTTGGACACACAAAG
Seq C2 exon
GTGTTCTTCAAGGCTGGTTTACTCGGTCAGCTTGAAGAAATGAGAGATGACAGACTATCTCTAATTATTTCTGGAATTCAGGCAAGATCCAGAGGACTTCTTGCAAGGGTTGAGTTCCAAAAGATAGTTGAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079564-'18-19,'18-18,19-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(10.0=100)
A:
PF0006316=Myosin_head=FE(6.0=100)
C2:
PF0006316=Myosin_head=PD(0.4=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCGCTGCATCATTCCTAA
R:
AGTCCTCTGGATCTTGCCTGA
Band lengths:
254-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]