BtaEX6087174 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30091416-30092141:-
Coord C1 exon
chr19:30092018-30092141
Coord A exon
chr19:30091792-30091928
Coord C2 exon
chr19:30091416-30091671
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTAACTTGTTCTTTGGCAAGGTT
3' ss Score
4.49
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATATAAGGTTCTAAATGCAAGTGCTATCCCAGAGGGTCAGTTCATCGACAGCAAGAAGGCTTCTGAGAAACTTTTAGGGTCTATTGACATTGACCACACCCAGTACAAATTTGGTCACACCAAG
Seq A exon
GTTTTCTTTAAGGCTGGCCTGCTGGGAATTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACACGCACTCAGGCCATTTGCAGAGGGTTCCTGATGAGAGTGGAGTTCAGGAAGATGATGGAGAGAAG
Seq C2 exon
AGAATCTATCTTCTGCATCCAGTACAATGTCCGTGCTTTCATGAACGTCAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAGACCAAAGAAGAGCTGGCTAAGTCAGAGGCAAAAAGGAAAGAACTTGAAGAGAAAATGGTGACTCTGATGCAAGAGAAAAATGACTTACAACTCCAAGTTCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794-'17-18,'17-17,18-18=AN
Average complexity
A_C1
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.233
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
PF0006316=Myosin_head=PD(0.4=6.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTATCCCAGAGGGTCAGT
R:
TCCTTCATGTTGGCCATCTCC
Band lengths:
242-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]