MmuEX7006813 @ mm10
Exon Skipping
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67250288-67251007:+
Coord C1 exon
chr11:67250288-67250411
Coord A exon
chr11:67250501-67250637
Coord C2 exon
chr11:67250752-67251007
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCTAACTGCTCTCTGCCAAGGTT
3' ss Score
6.12
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
ATACAAAGTCCTGAATGCAAGTGCCATCCCTGAGGGTCAGTTCATTGATAGCAAGAAGGCCTCTGAGAAACTTCTGGGTTCCATTGACATTGACCACACTCAGTACAAATTCGGTCACACTAAG
Seq A exon
GTTTTCTTTAAAGCCGGCCTGTTGGGAACTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACCCGCACTCAAGCCGTGTGCAGAGGGTACCTGATGAGGGTGGAGTTCAAAAAGATGATGGAGAGGAG
Seq C2 exon
AGAGTCCATCTTCTGCATTCAGTACAACGTCCGCGCCTTCATGAATGTGAAACACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAACCTCTGCTGAAGAGCGCGGAGACCGAGAAGGAGATGGCCAACATGAAGGAAGATTTTGAGAAGGCCAAGGAGGATCTGGCTAAGTCAGAGGCAAAAAGGAAGGAACTAGAAGAAAAGATGGTAGCTTTGATGCAGGAGAAAAATGACCTGCAGCTCCAGGTTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-'23-24,'23-22,33-24=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.140
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
PF0006316=Myosin_head=PD(0.4=6.5)
C2:
PF0157614=Myosin_tail_1=PU(28.5=64.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGCAAGTGCCATCCCT
R:
TTGGCCATCTCCTTCTCGGTC
Band lengths:
243-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types