RnoEX0056949 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53791560-53800182:+
Coord C1 exon
chr10:53791560-53791683
Coord A exon
chr10:53791775-53791911
Coord C2 exon
chr10:53800012-53800182
Length
137 bp
Sequences
Splice sites
3' ss Seq
TCCAACTCTTCTCTGCCAAGGTT
3' ss Score
6.38
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATACAAAGTTCTCAATGCAAGTGCTATCCCGGAAGGTCAGTTCATTGATAGCAAGAAGGCCTCTGAGAAGCTTCTAGGTTCCATTGACATCGACCATACCCAGTACAAATTCGGTCACACGAAG
Seq A exon
GTTTTCTTTAAAGCTGGCCTGCTGGGAACTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACGCGCACTCAAGCCGTGTGCAGAGGGTACCTGATGAGGGTGGAGTTCAGAAAGATGATGGAGAGGAG
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX2-20/41=19-36
Average complexity
C3
Mappability confidence:
79%=100=82%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.781
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(6.0=100)
A:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAAGTGCTATCCCGGAAG
R:
CTTCTTGCCGCCCTTCAGC
Band lengths:
257-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]