RnoEX0056950 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53791775-53800182:+
Coord C1 exon
chr10:53791775-53791911
Coord A exon
chr10:53792027-53792282
Coord C2 exon
chr10:53800012-53800182
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTAATTTTCTCCTTCCACAGAGA
3' ss Score
9.66
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTTTTCTTTAAAGCTGGCCTGCTGGGAACTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACGCGCACTCAAGCCGTGTGCAGAGGGTACCTGATGAGGGTGGAGTTCAGAAAGATGATGGAGAGGAG
Seq A exon
AGAGTCCATCTTCTGCATCCAGTACAACGTCCGCGCCTTCATGAACGTCAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAACCCCTGCTGAAGAGTGCAGAGACTGAGAAGGAGATGGCCACCATGAAGGAAGATTTTGAGAAGGCCAAGGAGGATCTGGCAAAGTCAGAGGCAAAAAGGAAAGAACTAGAAGAAAAGATGGTGGCTCTGATGCAAGAGAAAAATGATCTGCAGCTCCAGGTTCAAGCT
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX2-21/41=20-36
Average complexity
C3
Mappability confidence:
78%=90=81%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.781
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=43.5)
A:
PF0157614=Myosin_tail_1=PU(27.7=62.8)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTTAAAGCTGGCCTGCTGG
R:
TTTCTGGATCTGCTTCTTGCCG
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]