BtaEX6087175 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30090476-30091928:-
Coord C1 exon
chr19:30091792-30091928
Coord A exon
chr19:30091416-30091671
Coord C2 exon
chr19:30090476-30090718
Length
256 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTTTTCTTCCAACAGAGA
3' ss Score
10.4
5' ss Seq
TCTGTGAGT
5' ss Score
7
Exon sequences
Seq C1 exon
GTTTTCTTTAAGGCTGGCCTGCTGGGAATTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACACGCACTCAGGCCATTTGCAGAGGGTTCCTGATGAGAGTGGAGTTCAGGAAGATGATGGAGAGAAG
Seq A exon
AGAATCTATCTTCTGCATCCAGTACAATGTCCGTGCTTTCATGAACGTCAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAGACCAAAGAAGAGCTGGCTAAGTCAGAGGCAAAAAGGAAAGAACTTGAAGAGAAAATGGTGACTCTGATGCAAGAGAAAAATGACTTACAACTCCAAGTTCAATCT
Seq C2 exon
GAAGCAGATGGCTTGGCTGATGCAGAGGAAAGGTGTGACCAGTTGATTAAAACCAAAATCCAACTTGAGGCAAAAATCAAAGAGCTAACTGAGAGAGCAGAGGATGAGGAAGAGATTAATGCTGAGTTGACGGCCAAGAAGAGGAAACTGGAGGACGAATGTTCGGAACTGAAGAAAGACATAGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACACGCCACAGAAAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794-'18-19,'18-18,19-19=AN
Average complexity
A_C1
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.407
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NO
C2:
PF0157614=Myosin_tail_1=PU(29.6=49.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCTCATCACACGCACTC
R:
TCTCCTTCTCAACCTTGGCCA
Band lengths:
302-558
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]