MmuEX6041399 @ mm10
Exon Skipping
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:54953289-54956638:-
Coord C1 exon
chr14:54955703-54956638
Coord A exon
chr14:54953830-54953953
Coord C2 exon
chr14:54953289-54953531
Length
124 bp
Sequences
Splice sites
3' ss Seq
ATTGCACTCTTTCTGGTCAGGGA
3' ss Score
6.61
5' ss Seq
ATGGCCAAC
5' ss Score
-11.11
Exon sequences
Seq C1 exon
GTATTGGGGTAATGCTGTATCACATATATGAAGGTCAGAGAACAATCCACAGAGTTGGTTCTCTCGATTGATTGATTGATTGATTGATTGATTGATTGATTGATTGACTGACTGAGAAAAGGTTTCTCTGTGTAGCCCTGGTTGTCCTTGAACTCTCTCTGTAGAGAGGCTGGCCTCAAACGCAGAGATCTGCCTACCTTTGTATCCACCATAATGCTGACCTTAAAGGCATATACTGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCTATTGTTCACTGTTGTTCTACTATGTGGGTCCAAGGGATAAACTGAGGTCATCAGACAGCTTCTACCTGCCGAACCACCTCAAAGGCTCTTATTCTCTCTGTGTATATAAGCCACCTCACATTTATTTGTGTCTTTTGTGTGTGCATGTGTATATGGTACGTGTGCACATGTGTCCGTGCATGAAGCAGG
Seq A exon
GGATGCCCTGCTGGTTATCCAGTGGAACATTCGGGCCTTCATGGGGGTCAAGAATTGGCCATGGATGAAGCTCTACTTCAAGATCAAACCGCTGCTGAAGAGCGCAGAGACGGAGAAGGAGATG
Seq C2 exon
GAACAAGACAACCTCAATGATGCAGAGGAGCGCTGTGACCAGCTGATCAAGAACAAGATCCAGCTGGAGGCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAACGCCGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCAGAGCTCAAGAAGGATATTGATGACCTGGAGCTGACGCTGGCCAAGGTGGAAAAGGAAAAGCATGCAACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-'36-36,'36-35,37-36
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.481
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
PF0157614=Myosin_tail_1=PU(28.0=61.6)
C2:
PF0157614=Myosin_tail_1=FE(42.3=100),PF0157614=Myosin_tail_1=PU(8.3=11.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGCTTCTACCTGCCGAAC
R:
CGTTCATCTCCTCCTCGTCCT
Band lengths:
257-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types