MmuEX6041399 @ mm9
Exon Skipping
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55572126-55575475:-
Coord C1 exon
chr14:55575339-55575475
Coord A exon
chr14:55572535-55572790
Coord C2 exon
chr14:55572126-55572368
Length
256 bp
Sequences
Splice sites
3' ss Seq
ATTGCACTCTTTCTGGTCAGGGA
3' ss Score
6.61
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCGGGCCTGCTGGGGCTGCTCGAGGAGATGCGAGATGAGAGGCTGAGCCGTATCATCACCAGAATCCAGGCCCAGGCCCGAGGGCAGCTCATGCGCATTGAGTTCAAGAAGATAGTGGAACGCAG
Seq A exon
GGATGCCCTGCTGGTTATCCAGTGGAACATTCGGGCCTTCATGGGGGTCAAGAATTGGCCATGGATGAAGCTCTACTTCAAGATCAAACCGCTGCTGAAGAGCGCAGAGACGGAGAAGGAGATGGCCAACATGAAGGAGGAGTTTGGGCGAGTCAAAGATGCACTGGAGAAGTCTGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTACAGCTCCAAGTGCAGGCG
Seq C2 exon
GAACAAGACAACCTCAATGATGCAGAGGAGCGCTGTGACCAGCTGATCAAGAACAAGATCCAGCTGGAGGCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAACGCCGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCAGAGCTCAAGAAGGATATTGATGACCTGGAGCTGACGCTGGCCAAGGTGGAAAAGGAAAAGCATGCAACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-'23-27,'23-26,24-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.058 C2=0.481
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5),PF0061222=IQ=WD(100=45.7)
A:
PF0157614=Myosin_tail_1=PU(28.0=61.6)
C2:
PF0157614=Myosin_tail_1=FE(42.3=100),PF0157614=Myosin_tail_1=PU(8.3=11.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGCCGTATCATCACCAG
R:
TTCCTTTTCCACCTTGGCCAG
Band lengths:
306-562
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: