DreEX6026949 @ danRer10
Exon Skipping
Gene
ENSDARG00000079564 | vmhc
Description
ventricular myosin heavy chain [Source:ZFIN;Acc:ZDB-GENE-991123-5]
Coordinates
chr2:24607857-24608666:-
Coord C1 exon
chr2:24608530-24608666
Coord A exon
chr2:24608182-24608437
Coord C2 exon
chr2:24607857-24608099
Length
256 bp
Sequences
Splice sites
3' ss Seq
AAAATGTAACCTCTTCATAGGGA
3' ss Score
5.4
5' ss Seq
GCGGTCAGT
5' ss Score
6.52
Exon sequences
Seq C1 exon
GTGTTCTTCAAGGCTGGTTTACTCGGTCAGCTTGAAGAAATGAGAGATGACAGACTATCTCTAATTATTTCTGGAATTCAGGCAAGATCCAGAGGACTTCTTGCAAGGGTTGAGTTCCAAAAGATAGTTGAAAGAAG
Seq A exon
GGATGCCCTACTGGTTATCCAGTGGAATGTCCGTGCCTTCATGGGGGTGAAAAATTGGCCCTGGATGAAGCTTTTCTTCAAGATAAAACCTCTTCTCAAGTCAGCAGAAGCAGAGAAAGAGATGGCAAATATGAAAGATGAATTTGCCAAGCTCAAAGAGGCTTATGCTAAATCCGAAGCGAGAAGGAAAGAGCTAGAAGAAAAAATGGTGTCTCTTCTCCAAGAGAAGAATGACCTACAACTTCAAGTTCAAGCG
Seq C2 exon
GAGCAAGACAATCTCTGTGATGCAGAGGAACGATGTGACCAGCTCATCAAAAACAAGATTCAGCTTGAGGCTAAAGCCAAAGAGCTCACCGAGCGACTTGAGGATGAGGAGGAGATGAATGCAGAGCTGACAGCTAAGAAGAGAAAGCTGGAGGACGAATGCTCTGAGCTGAAGAAGGATATTGATGATCTGGAGCTCACTCTGGCTAAAGTCGAGAAAGAGAAGCATGCTACTGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079564-'20-21,'20-20,21-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.407
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
C2:
PF0157614=Myosin_tail_1=FE(41.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCTGGTTTACTCGGTCA
R:
AGCATTCGTCCTCCAGCTTTC
Band lengths:
292-548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]