HsaEX6021032 @ hg38
Exon Skipping
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10453643-10455077:-
Coord C1 exon
chr17:10454941-10455077
Coord A exon
chr17:10454555-10454810
Coord C2 exon
chr17:10453643-10453885
Length
256 bp
Sequences
Splice sites
3' ss Seq
CTTTTTTTCTTTTCCTACAGAGA
3' ss Score
11.51
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTTTCTTCAAAGCTGGCCTGCTGGGAACTCTAGAGGAAATGCGAGATGAAAAGCTAGCTCAACTCATCACGCGCACTCAAGCCATATGCAGAGGGTTCCTGATGAGAGTGGAGTTCAGAAAGATGATGGAGAGGAG
Seq A exon
AGAGTCCATCTTCTGCATTCAGTACAACATCCGTGCTTTCATGAATGTGAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAAACCAAAGAAGAGCTGGCTAAGACAGAGGCAAAAAGGAAAGAACTAGAAGAAAAGATGGTGACGCTAATGCAAGAGAAAAATGACTTACAACTCCAAGTTCAAGCT
Seq C2 exon
GAAGCAGATGCCTTGGCTGATGCAGAGGAAAGATGTGATCAGTTGATTAAAACCAAAATCCAACTTGAGGCCAAAATCAAAGAGGTAACTGAAAGAGCTGAGGATGAGGAAGAGATCAATGCTGAGCTGACAGCCAAGAAGAGGAAACTGGAGGATGAATGTTCAGAGCTCAAGAAAGACATTGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAACATGCCACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424-'20-22,'20-20,21-22=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.383
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCATCACGCGCACTCAAG
R:
TCTCCTTCTCAACCTTGGCCA
Band lengths:
299-555
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains