RnoEX0056951 @ rn6
Exon Skipping
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53792978-53800182:+
Coord C1 exon
chr10:53792978-53793220
Coord A exon
chr10:53793431-53793607
Coord C2 exon
chr10:53800012-53800182
Length
177 bp
Sequences
Splice sites
3' ss Seq
CCATCTGTTCAAATCTAAAGGTG
3' ss Score
5.86
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GAAGCAGATGGCTTAGCTGATGCAGAGGAAAGATGCGACCAGCTGATCAAAACTAAAATCCAACTGGAGGCCAAAATCAAAGAGTTGACTGAGAGGGCTGAGGATGAGGAAGAGATCAATGCCGAGCTCACCGCCAAGAAGAGGAAGCTGGAGGACGAGTGCTCAGAGCTGAAGAAAGACATCGATGACCTTGAGCTGACACTGGCCAAGGTTGAGAAGGAGAAGCACGCCACGGAGAACAAG
Seq A exon
GTGAAAAACCTCACAGAAGAGATGGCAGGCTTGGATGAAAATATTGCTAAGCTGACCAAGGAGAAGAAGGCCCTGCAGGAGGCCCACCAGCAGACCCTGGATGACCTGCAGGCAGAGGAGGACAAAGTCAACACCCTGACCAAAGCCAAAACCAAGCTCGAACAGCAAGTGGATGAC
Seq C2 exon
GCCGCCATGATGGCGGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGGATGAAGAAGAACATGGAGCAGACGGTGAAGGACCTGCAGCACCGTCTGGACGAGGCTGAGCAGCTGGCGCTGAAGGGCGGCAAGAAGCAGATCCAGAAACTGGAGGCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695_MULTIEX2-23/41=22-36
Average complexity
C2
Mappability confidence:
75%=100=79%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=0.983 C2=0.781
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.0=100),PF0157614=Myosin_tail_1=PU(30.1=50.6)
A:
PF0157614=Myosin_tail_1=FE(29.7=100),PF0157614=Myosin_tail_1=FE(42.6=100),PF087025=Fib_alpha=PU(14.5=28.8)
C2:
PF0157614=Myosin_tail_1=FE(6.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGAGAGGGCTGAGGATG
R:
CACCGTCTGCTCCATGTTCTT
Band lengths:
245-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]