BtaEX6087207 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011803 | MYHC-EMBRYONIC
Description
myosin-3 [Source:RefSeq peptide;Acc:NP_001095305]
Coordinates
chr19:30243099-30244198:-
Coord C1 exon
chr19:30244135-30244198
Coord A exon
chr19:30243957-30244055
Coord C2 exon
chr19:30243099-30243202
Length
99 bp
Sequences
Splice sites
3' ss Seq
TCCTGTGTTTGCGTTCCTAGATC
3' ss Score
10.53
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GGCAAGTTCATCCGCATCCATTTTGGTACCACGGGAAAGCTGGCCTCTGCAGATATTGAAACAT
Seq A exon
ATCTGCTGGAAAAGTCAAGAGTGACCTTCCAGCTGAAGGCTGAGAGAAGCTACCACATCTTCTACCAGATTCTTTCCAATAAGAAGCCTGAGCTCATAG
Seq C2 exon
AGCTGCTGCTCATCACAACCAACCCTTATGACTACCCCTTCATCAGCCAGGGCGAGATCCTGGTGGCCAGCATTGAAGACGCTGAGGAGCTGCTGGCCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011803-'12-11,'12-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
PF0006316=Myosin_head=FE(4.9=100)
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTTCATCCGCATCCAT
R:
ATCCGTGGCCAGCAGCTC
Band lengths:
168-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]