RnoEX6047769 @ rn6
Exon Skipping
Gene
ENSRNOG00000046276 | Myh3
Description
myosin heavy chain 3 [Source:RGD Symbol;Acc:3138]
Coordinates
chr10:53628119-53630528:+
Coord C1 exon
chr10:53628119-53628182
Coord A exon
chr10:53628267-53628365
Coord C2 exon
chr10:53630425-53630528
Length
99 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTGTTTCTGTTCCAGATC
3' ss Score
12.81
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GGCAAGTTCATCCGCATCCATTTCGGCACCACTGGGAAGCTGGCCTCTGCAGATATTGAAACTT
Seq A exon
ATCTGCTGGAAAAGTCCAGAGTCACCTTCCAGCTGAAGGCTGAGAGAAGCTATCACATCTTCTACCAGATTCTTTCCAACAAGAAGCCGGAACTGATCG
Seq C2 exon
AGTTGCTGCTGATTACGACCAACCCTTACGACTACCCATTCATCAGCCAGGGTGAAATCCTGGTGGCCAGCATCGATGATGCTGAGGAACTGTTGGCTACAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046276-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(3.1=100)
A:
PF0006316=Myosin_head=FE(4.9=100)
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGTTCATCCGCATCCAT
R:
GCCAACAGTTCCTCAGCATCA
Band lengths:
161-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]