BtaEX6087965 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019498 | ITGA3
Description
Integrin alpha-3 Integrin alpha-3 heavy chain Integrin alpha-3 light chain [Source:UniProtKB/Swiss-Prot;Acc:F1MMS9]
Coordinates
chr19:37218158-37219483:-
Coord C1 exon
chr19:37219397-37219483
Coord A exon
chr19:37218820-37219027
Coord C2 exon
chr19:37218158-37218354
Length
208 bp
Sequences
Splice sites
3' ss Seq
CCACCTTCCCCCCATCCCAGGCT
3' ss Score
8.22
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GAAACAGCTACATGATTCAGCGGAAGGACTGGGATTTGTCTGAATATAGTTACAAGGACCCAGAGGACCAAGGAAACCTCTATATTG
Seq A exon
GCTACACGATGCAGGTGGGCAGTGCCATCTTGCACCCCACAAACATCACCATTGTGACAGGTGCCCCGCGGCACCAACATGTGGGCGCTGTCTTTTTGCTGAGCCAGGAAGCAGGTGGAGACTTGCGGAGGAGGCAGGTGCTGGAGGGCACGCAGGTGGGAGCCTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGG
Seq C2 exon
GTGGCAGGACCTCCTGGTGGGTGCCCCCTATTACTTTGAGCGGAAAGAGGAAGTAGGGGGTGCGATTTATATCTTCATGAACCAGGCAGGCACCTCCTTCCCAGACCACCCCTCCCTCCTTCTTCATGGCCCCAGTCGCTCCGCCTTCGGCTTCTCTGTGGCAAGCATTGGTGACGTCAACCAAGACGGATTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019498-'4-8,'4-6,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0183918=FG-GAP=PU(33.3=18.6)
C2:
PF0183918=FG-GAP=PD(64.1=37.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAGCTACATGATTCAGCGG
R:
CCTGGAATCCGTCTTGGTTGA
Band lengths:
284-492
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]