RnoEX0045007 @ rn6
Exon Skipping
Gene
ENSRNOG00000004276 | Itga3
Description
integrin subunit alpha 3 [Source:RGD Symbol;Acc:1310333]
Coordinates
chr10:82873588-82874923:-
Coord C1 exon
chr10:82874837-82874923
Coord A exon
chr10:82874238-82874445
Coord C2 exon
chr10:82873588-82873784
Length
208 bp
Sequences
Splice sites
3' ss Seq
ACTTCCCCCCCTCATCCCAGGGT
3' ss Score
8.54
5' ss Seq
TGGGTGAGA
5' ss Score
6.04
Exon sequences
Seq C1 exon
GAAACAGCTACATGATTCAGCGGAAAGACTGGGATTTATCTGAATACAGCTACAGGGGCTCAGAGGACCAGGGAAACCTCTATATTG
Seq A exon
GGTACACGATGCAGGTAGGCAGTGCCATCCTACATCCCTCGGAGATCACTCTTGTGACGGGTGCCCCACGGCACCAACATATGGGCGCTGTCTTCTTGCTGAAACAAGAGTCGGGTGGAGACCTGCAGAGGAGGCAGGTGCTGAAGGGCACGCAGGTGGGCGCTTATTTTGGCAGTGCCATTGCCCTGGCAGACCTGAACAATGATGG
Seq C2 exon
GTGGCAGGACCTCCTGGTGGGTGCTCCCTACTACTTCGAACGGAAAGAGGAGGTAGGGGGTGCCGTCTATGTCTTCATGAACCAGGCGGGAACGTCCTTCCCTGATCAGCCTTCCCTCCTGCTCCATGGCCCCAGTCGCTCTGCCTTTGGCATCTCTGTAGCCAGCATTGGTGACATCAACCAGGATGGATTCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004276-'5-9,'5-6,7-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
PF135171=VCBS=PU(6.7=7.1)
C2:
PF135171=VCBS=FE(88.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACAGCTACATGATTCAGCGGA
R:
TCCATCCTGGTTGATGTCACC
Band lengths:
276-484
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]