BtaEX6091098 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61889923-61894288:+
Coord C1 exon
chr19:61889923-61890033
Coord A exon
chr19:61893250-61893425
Coord C2 exon
chr19:61894169-61894288
Length
176 bp
Sequences
Splice sites
3' ss Seq
ATGTATTTTTTGCTTTTTAGGGT
3' ss Score
11.07
5' ss Seq
GAAGTATGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
GTTTATCATTTGACATATACGAGGGCCAGATCACTGCCCTGCTTGGCCACAGCGGAACAGGAAAGAGCACACTGATGAATATTCTGTGCGGGCTGTGCCCGCCCTCAGAGG
Seq A exon
GGTTCGCATCCATATATGGACACAGAGTCTCAGAAATAGATGAAATGTTTGAAGCCAGGAAAATGATTGGCATTTGTCCACAGCTAGACATACACTTTGATGTCCTGACGGTAGAGGAAAACTTGTCCATTTTGGCATCAATCAAAGGAATACCAGCCAATGATGTCATACAGGAA
Seq C2 exon
GTGCAGAGGGTCTTACTGGATTTAGACATGCAGGCTGTCAAAGATAATCAGGCTAAAAAGTTAAGTGGTGGCCAGAAAAGAAAACTGTCTTTAGGAATCGCTGTTCTCGGGAACCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'13-12,'13-11,14-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(25.2=100)
A:
PF0000522=ABC_tran=FE(39.5=100)
C2:
PF0000522=ABC_tran=FE(26.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGACATATACGAGGGCCA
R:
TCCCGAGAACAGCGATTCCTA
Band lengths:
218-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]