BtaEX6091102 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002747 | ABCA5
Description
ATP-binding cassette, sub-family A (ABC1), member 5 [Source:HGNC Symbol;Acc:HGNC:35]
Coordinates
chr19:61875348-61878667:+
Coord C1 exon
chr19:61875348-61875509
Coord A exon
chr19:61876843-61876931
Coord C2 exon
chr19:61878438-61878667
Length
89 bp
Sequences
Splice sites
3' ss Seq
CTCATGCGTTTCCTCTGTAGCTG
3' ss Score
9.06
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
TCGTAACTATTGAAGAATATGCAGATGAAAAAGAATTGGTAACATCTAGTCTTTCCAAGTCTGACACCTTTGTAGGCGTTGTGTTCAAAGACTTCATGTCCTACGAGCTCCGGTTTTTTCCTGATACGATTCCAGTATCTTCTGTTTATATGGATTCAAGAG
Seq A exon
CTGGCTGTTCCCCATCGTGTGACGCCGTCCAGTTCTGGTCCTCAGGGTTCACAGTTCTGCAGGCCTCGATAGACGCAGCCATCATACAG
Seq C2 exon
ATGAAGACCAATGTTTCTTTTTGGAAAGAGCTGGAGTCAACTAAAGCTGTTCTTATGGGAGAAACGGCTGTTGTAGAAATAGACACCTTTCCCCGAGGAGTAATTTTAATATACCTAGTTATAGCATTTTCACCTTTTGGATACTTTTTGGCAATTCATATCGTAGCAGAAAAAGAGAAGAAGTTAAAAGAGTTTTTAAAGATAATGGGACTTCATGACACGGCCTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002747-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(14.0=100)
A:
PF126982=ABC2_membrane_3=FE(7.5=100)
C2:
PF126982=ABC2_membrane_3=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCCTACGAGCTCCGGTTT
R:
TACTCCTCGGGGAAAGGTGTC
Band lengths:
169-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]