BtaEX6091699 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013831 | DSG1
Description
Bos taurus desmoglein 1 (DSG1), mRNA. [Source:RefSeq mRNA;Acc:NM_174045]
Coordinates
chr24:26124012-26133405:-
Coord C1 exon
chr24:26133267-26133405
Coord A exon
chr24:26124402-26124437
Coord C2 exon
chr24:26124012-26124143
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTTTATCTTATTTTTTATAGGTG
3' ss Score
9.08
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AAGCAGACATCAGCTGAGTGGGGGGAAGAGAAAGAACAGAGAAGAAAAAACAAAACTCCCTCGATCTTGGATGTAAGAGAACCCAGCAGCGATGAACTGGCCCTTCTTCAGAGCAGCTGTGGTGCTGTTCATTTTCCTG
Seq A exon
GTGGTGCTGGAAGTTAACAGTGACTTTAGAATCCAG
Seq C2 exon
GTCAGGGATTATAACACTAAAAATGGCACCATCAAGTGGCACTCCCTCAGGAGGCAAAAGCGCGAGTGGATCAAGTTTGCTGCAGCCTGCCGGGAAGGGGAGGACAACTCAAAGAGGAACCCGATCGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013831-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0002812=Cadherin=PU(18.9=40.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGCCCTTCTTCAGAGC
R:
ACTTGATCCACTCGCGCTTTT
Band lengths:
122-158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]