RnoEX0029967 @ rn6
Exon Skipping
Gene
ENSRNOG00000016853 | Dsg1
Description
desmoglein 1 [Source:RGD Symbol;Acc:1309925]
Coordinates
chr18:12008759-12018110:+
Coord C1 exon
chr18:12008759-12008806
Coord A exon
chr18:12017516-12017551
Coord C2 exon
chr18:12017979-12018110
Length
36 bp
Sequences
Splice sites
3' ss Seq
GTTGTGGCTGCTTTTCACAGGTG
3' ss Score
7.36
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGACTGGCACTCCTTCAGGAGAGCTGCCCTGCTGCTTGCTTTCCTG
Seq A exon
GTGGTGCTTGAAGTTAACAGTGAATTTCAAATCCAG
Seq C2 exon
GTAAGAGATCATAACGCCAAAAATGGTACCATCAAGTGGCATTCCATCAGAAGGCAGAAACGAGAATGGATCAAGTTCGCCGCAGCCTGTCGGGAAGGAGAAGACAACTCAAAAAGAAACCCAATTGCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016853-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.136
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0002812=Cadherin=PU(18.9=40.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGCTGCTTGCTTTCCTG
R:
TGTCTTCTCCTTCCCGACAGG
Band lengths:
126-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]