BtaEX6091711 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013831 | DSG1
Description
Bos taurus desmoglein 1 (DSG1), mRNA. [Source:RefSeq mRNA;Acc:NM_174045]
Coordinates
chr24:26089489-26099457:-
Coord C1 exon
chr24:26099385-26099457
Coord A exon
chr24:26097425-26097633
Coord C2 exon
chr24:26089489-26094575
Length
209 bp
Sequences
Splice sites
3' ss Seq
AATTTGATTAACACTTTTAGGAG
3' ss Score
4.02
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTCTGGCCAGTAGTGCTGTACCATGCATACCAGCCACTAATGCAAATGTAATTGAGTATGTTGACAACTCAG
Seq A exon
GAGTTTACACAAATGAGTATGGTGCCAGAGAAATGCAAGATCTGGGAGGAGGAGAAAGAACGACAGGATTTGAACTAACAGATGGAGTTAAAATGTCAGGAGGACCTGAGATATGTCAAGAATATCCTGGAACACTAAGAAGAAATTCTATGAGGGAATGTAGAGAAGGAGGGCTGAATATGAACTTCATGGAAAGTTACTTCTGCCAG
Seq C2 exon
AAAGCATATGCTTATGCGGATGAAGACGAAGGACGCCCATCCAATGACTGTCTGCTAATCTACGATATTGAGGGTGCAGGCTCCCCTGCGGGCTCTGTGGGCTGTTGTAGCTTCATTGGAGAAGACTTGGATGACAGCTTCTTGGATACACTGGGGCCGAAGTTTAAGAAGTTGGCAGACATCAGCCTGGGAAAAGACGTTGAACCATTTCCAGACTCTGATCCCTCTTGGCCACCTGAGAGCACTGAGCCGGTCTGCCCTCCGCAGGGAACAGAGCCCACTGGTGGTGGACACCCACCCATCTCCCCACGTTTCGGCACCACCACCGTCATCTCTGAGAACACCTACCCCTCGGGACCTGGGGTACAGCACCCTACGCCGATTCCTGATCCTCTGGGCTATGGTAATGTCACCGTGACCGAGTCTTACACCTCCTCGGGCACTCTGAAGCCCTCTGTCCACATTCACGATAACCGACACGCATCAAACGTGGTGGTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013831-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.171 C2=0.596
Domain overlap (PFAM):
C1:
NO
A:
PF0104912=Cadherin_C=PU(50.0=94.3)
C2:
PF0104912=Cadherin_C=PD(48.5=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCAGTAGTGCTGTACCAT
R:
GGCCAAGAGGGATCAGAGTCT
Band lengths:
302-511
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]