RnoEX6058161 @ rn6
Exon Skipping
Gene
ENSRNOG00000016853 | Dsg1
Description
desmoglein 1 [Source:RGD Symbol;Acc:1309925]
Coordinates
chr18:12033392-12038053:+
Coord C1 exon
chr18:12033392-12033464
Coord A exon
chr18:12035750-12035958
Coord C2 exon
chr18:12037040-12038053
Length
209 bp
Sequences
Splice sites
3' ss Seq
GATGGGTTCACCGTTTGTAGGAG
3' ss Score
4.93
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GGTATAACCACCATCTGTGTGCCACAAATGCCACCTGGTAATGCCAATATTATAGAATGTATTGACAACTCAG
Seq A exon
GAGTTTATACAAATGAATATTGTGGCAGAGAAATGCAAGATCTGGGAGGAGGAGAAAGAACTACAGGATTTGAACTGGTGGATGGAGTTAAAACATCAGCTGCACCTGAGATATGCCAAGAATACTCAGGAACATTAAGAAGAAATTCAATGAGAGAATGTAGAGATGGGGGCCTCAATATGAATTTCATGGAAAGTTACTTCTGCCAG
Seq C2 exon
AAGGCCTATGCGTACGCGGATGAAGATGAAGGACGTCCTTCCAATGACTGTTTGCTCATCTATGACATCGAAGGCGCGGGGTCCCCTACAGGCTCTGTGGGCTGCTGCAGCTTCATCGGGGAAGATCTGGATGAAAGCTTCCTTGATACCTTGGGGCCCAAGTTTAAGAAGTTGGCCGATATCAGCCTAGGAAAAGAAATAGACTCATACCCAGATCCCGATCCTTCTTGGCCTCCTCAGAGCACTGAACCAATTTGCCCCCAGCGTACAGAGCCCCTTGCTAGTGGACACCCACCCATCTCCCCACATTTTGGCACTACCACAGTAATTTCTGAGAACACCTACCCCTCTGGCCCTGGCATACAGCATCCTATGCAAATTCCTGATCCTCTGGGCTATGGTAATGTCACTGTGAGGGAGTCCTATACCACCTCTGGCACTCTGAAACCCTCTGTCCACTTTCATGATAACCGACAGGCTTCAAATGTGGTGGTGACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016853-'20-18,'20-16,21-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.029 C2=0.535
Domain overlap (PFAM):
C1:
NO
A:
PF0104912=Cadherin_C=PU(49.6=92.9)
C2:
PF0104912=Cadherin_C=PD(48.9=26.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGTGTGCCACAAATGCCA
R:
CTCTGAGGAGGCCAAGAAGGA
Band lengths:
303-512
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]