BtaEX6091821 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000027181 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr24:33263943-33270598:-
Coord C1 exon
chr24:33270480-33270598
Coord A exon
chr24:33266369-33266459
Coord C2 exon
chr24:33263943-33264074
Length
91 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTGTTTCTTTCTAGCAT
3' ss Score
10.5
5' ss Seq
TTCGTAAGT
5' ss Score
9.77
Exon sequences
Seq C1 exon
CATGCAACTGCCATGGACACTCCACCGACTGTTACTATGATCCGGATGTTGAGAGGCAGCAGGCAAGCTTGAATATCCAAGGCCTCTATGCAGGTGGAGGGGTCTGCATTAACTGTCAG
Seq A exon
CATAACACAGCCGGTGTAAACTGTGAGAAGTGTGCTAAGGGCTATTACCGCCCTTATGGCATTCCGGTCCATGCCCCCGATGGCTGCATTC
Seq C2 exon
CCTGCAGCTGCCACCCGGAGCATGCGGAGGACTGTGAGCAGGGCTCCGGCCGCTGCACCTGCAGGCCCAACTTCCGCGGAGACCACTGTGAGGAGTGTGCGGCCGGCTACTATCATTTCCCAGTTTGCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000027181-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(55.9=95.0)
A:
PF0005319=Laminin_EGF=PD(41.2=90.3)
C2:
PF0005319=Laminin_EGF=WD(100=97.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCAAGGCCTCTATGCAGGT
R:
TGGGAAATGATAGTAGCCGGC
Band lengths:
167-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]