GgaEX6021371 @ galGal4
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
laminin, alpha 3 [Source:HGNC Symbol;Acc:HGNC:6483]
Coordinates
chr2:102808814-102813609:+
Coord C1 exon
chr2:102808814-102808932
Coord A exon
chr2:102812376-102812466
Coord C2 exon
chr2:102813478-102813609
Length
91 bp
Sequences
Splice sites
3' ss Seq
TCCTGTTTTATTTTGCACAGCAT
3' ss Score
6.26
5' ss Seq
TATGTAAGG
5' ss Score
4.37
Exon sequences
Seq C1 exon
CCTGCAATTGCCATGGACATGCCACTGACTGCTACTATGATGCTGATGTTGATCAGCGTCGAGAAAGCCTAAATATTCATGGGCATTATGAAGGTGGAGGAGTCTGCATTAACTGCCAG
Seq A exon
CATAATACAGCTGGTGTTAACTGTGAGAAGTGTGCAAAAGGTTACTATCGTCCTTATGGTGTTCCAGCAAGAGCTCCTGATGGCTGTATAT
Seq C2 exon
CTTGCCCTTGTGATTTGGAGCGTGCAGAGGGCTGTGAGGAAGGATCAGGCCGCTGTTTCTGCAAGTGGAATTTCCAGGGAGAAAACTGTGAACACTGTGCTGATGGATTCTATAGTTTTCCATTTTGTATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'8-11,'8-10,9-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAATTGCCATGGACATGC
R:
GAAACAGCGGCCTGATCCTTC
Band lengths:
177-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]