BtaEX6096687 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021237 | DST
Description
dystonin [Source:HGNC Symbol;Acc:HGNC:1090]
Coordinates
chr23:3507857-3511543:+
Coord C1 exon
chr23:3507857-3508035
Coord A exon
chr23:3509731-3509869
Coord C2 exon
chr23:3511350-3511543
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGTTTAATTATCTTTTTCAGGTT
3' ss Score
11.05
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
AAACTAAAGAAAGAACTGGAGCGACTTAAAGATGATTTGGCCACGATCACAAGTAAATGTGAAGACTTTTTCAGTCAGGCGCCTGCCTCTGCCTCCACGCCCGCCTTGCGGTCTGAGCTCAGCGTGGTTGTCCAGAGCATGAACCATGTCTATTCCATGTCGTCCACCTACATAGAGAA
Seq A exon
GTTGAAAACGGTCAACTTGGTGTTAAAAAACACTCAAGCTGCAGAAGCCCTTGTCAAACTCTATGAAACTAAATTGTGTGAAGAGGAAGCAGTTATAGCTGACAAGAATAACATTGAGAATCTGATAAGTACTTTAAAG
Seq C2 exon
CAATGGAGATCTGAAGTGGATGAAAAGAGAGAGGTCTTCCATGAGCTGGAGGATGAGCTGCAGAGAGCAAAGACCATCAGTGATGAGATGTTTAAAACCTACAAAGAGCGTGACCTTGACTTTGACTGGCACAAAGAAAAAGCAGATCAGTTGGTTGAGAGATGGCAGAATGTTCATGTTCAGATTGACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021237-'34-28,'34-27,35-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTTTTCAGTCAGGCGCCTG
R:
TGTGCCAGTCAAAGTCAAGGT
Band lengths:
248-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]