DreEX6059658 @ danRer10
Exon Skipping
Gene
ENSDARG00000098631 | CABZ01044277.1
Description
NA
Coordinates
chr13:1409353-1412404:+
Coord C1 exon
chr13:1409353-1409531
Coord A exon
chr13:1411941-1412079
Coord C2 exon
chr13:1412155-1412404
Length
139 bp
Sequences
Splice sites
3' ss Seq
TGATTTTCTGGTTGACTCAGGCT
3' ss Score
5.27
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
AAGAAGAAGGTGGAGCTGGACAGGCTGAAGGATGAGCTGGAGACTCTGAGAGAGAAGTGTGAAGTTTTCCTCCGTCAGGCGTCCGCTTCTCCATCCGTCCCCACACTGTCCTCCGAGCTCAGCGTCCTCACCCAGAGCTCCAGCCAGGTCTACTCCATGTGCTGCATCTACCTGGAGAA
Seq A exon
GCTGAAGACGGTGAGTTTGGTGGTGAAACACAGTCAAAGCGCTGAAGCTCTGGTCAAACTATATGAGGCCAAGCTGAGCGAGGAGGATTCAGTAAATGCCAACATCAAGTCTATCGATGGAGTCGTGAGCACTCTTAAG
Seq C2 exon
CAATGGAGGTCTGAAATTGACGAGAAGCGAGAGGTTTTCCATGACCTGGAGGACGAGCTGCAGAAGGCGCGGGTGGTCAGCGAACGCATGTTTAAAACGCACAACGAGAGAGACTTTGATTTGGACTGGCACAAGGAGAAGGCAGACCAGCTGAAAGAAAGATGGCAGAACATCCACTCTCAGATTGAAAACAGGTCATTATGTTGATCCTTTAGCTCCGTCTAGTGCTGTGCTGCAGGATTCAGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098631-'11-14,'11-13,12-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF101864=Atg14=FE(32.1=100),PF142271=UBN2_2=PU(10.5=13.3)
A:
PF101864=Atg14=FE(25.0=100),PF142271=UBN2_2=FE(60.5=100)
C2:
PF101864=Atg14=PD(35.9=95.7),PF142271=UBN2_2=PD(26.3=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGGCTGAAGGATGAGCTG
R:
TAAACATGCGTTCGCTGACCA
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]