BtaEX6096811 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7304799-7305390:-
Coord C1 exon
chr23:7305346-7305390
Coord A exon
chr23:7305179-7305232
Coord C2 exon
chr23:7304799-7304843
Length
54 bp
Sequences
Splice sites
3' ss Seq
TTCCCCTCACCTGAATGCAGGGA
3' ss Score
5.25
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
Exon sequences
Seq C1 exon
GGAGACGACGGAGAGATCGGGCCTCGGGGGCTGCCTGGGGAGTCG
Seq A exon
GGACCTCGAGGTCTCCTTGGCCCCAAAGGCCCTCCTGGGATTCCTGGACCCCCG
Seq C2 exon
GGAGTCCGAGGCATGGATGGCCCCCACGGTCCCAAAGGCAGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(17.9=100),PF0139113=Collagen=FE(16.7=100)
A:
PF0139113=Collagen=FE(20.2=100)
C2:
PF0139113=Collagen=FE(16.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACGACGGAGAGATCGGG
R:
CAAGCTGCCTTTGGGACCG
Band lengths:
89-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]