DreEX6071883 @ danRer10
Exon Skipping
Gene
ENSDARG00000012422 | col11a2
Description
collagen, type XI, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-000208-23]
Coordinates
chr19:7276912-7277720:-
Coord C1 exon
chr19:7277676-7277720
Coord A exon
chr19:7277436-7277489
Coord C2 exon
chr19:7276912-7276956
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTCTCATTTTTGTAGGGA
3' ss Score
10.37
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
Exon sequences
Seq C1 exon
GGAGATGATGGAGATGTTGGACCCAGAGGTCTTCCTGGCGAACCT
Seq A exon
GGACCCCGTGGTTTGTTGGGGCCTAAAGGGCCTTCTGGACTTCCTGGACCTCCT
Seq C2 exon
GGTGTTCGTGGAAATGATGGTCCACATGGTCCAAAAGGAAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012422-'26-25,'26-24,27-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(11.0=60.0),PF0139113=Collagen=FE(15.6=100)
A:
PF0139113=Collagen=FE(18.9=100)
C2:
PF0139113=Collagen=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATGATGGAGATGTTGGACC
R:
TCCTTTTGGACCATGTGGAC
Band lengths:
84-138
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]