BtaEX6096813 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000601 | COL11A2
Description
collagen, type XI, alpha 2 [Source:HGNC Symbol;Acc:HGNC:2187]
Coordinates
chr23:7304309-7304843:-
Coord C1 exon
chr23:7304799-7304843
Coord A exon
chr23:7304549-7304602
Coord C2 exon
chr23:7304309-7304353
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCCTGGCTGCCTGTTTCCAGGGA
3' ss Score
8.21
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGAGTCCGAGGCATGGATGGCCCCCACGGTCCCAAAGGCAGCTTG
Seq A exon
GGACCCCAGGGAGAACCAGGACCTCCGGGACAGCAGGGCACCCCCGGGACCCAG
Seq C2 exon
GGTCTCCCCGGGCCCCAGGGTGCCATTGGCCCTCATGGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000601-'25-25,'25-24,26-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.7=100)
A:
PF0139113=Collagen=FE(20.2=100)
C2:
PF0139113=Collagen=PD(2.4=13.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGTCCGAGGCATGGATGG
R:
TCTCTCCATGAGGGCCAATGG
Band lengths:
88-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]